Bioinformatician in Microbiome Research 80%-100%, Zurich, fixed-term The Institute of Microbiology at ETH Zurich invites applications for a Bioinformatician embedded in the Microbiome Research Lab. We seek a highly motivated, skilled, and organised individual to support multiple experimental and computational research groups. The successful candidate will contribute to both a collaborative research network and institute-wide activities, including data management and the maintenance of computational infrastructure and software. Project background The position is part of the Institute of Microbiology at ETH Zurich and closely linked to projects within the NCCR Microbiomes. The NCCR Microbiomes is a nationwide, interdisciplinary research programme, bringing together experimental and computational researchers with the aim of understanding and engineering the structure, function, and dynamics of microbiomes across diverse biological and environmental systems. Several research groups at the Institute of Microbiology contribute to the NCCR Microbiomes. The Bioinformatician will play a central role in supporting collaborative research projects across the network through advanced data analysis, interpretation, and visualisation using reproducible computational workflows. In addition, the position supports institute-wide bioinformatics activities, including the management of data and shared computational infrastructure, enabling efficient and sustainable microbiome research. Job description The scope of responsibilities will therefore be adapted to the qualifications and experience of the successful candidate. Key responsibilities include: Support and contribute to research projects of PhD students and postdoctoral researchers at the Institute of Microbiology by applying and advising on appropriate bioinformatics, biostatistics, and modelling approaches Perform and support the analysis, integration, and visualisation of multi-omics data (e.g., genomics, metagenomics, metatranscriptomics, proteomics, metabolomics, and imaging data) Collaborate with experimental and computational researchers on study design, data interpretation, and the development of reproducible computational workflows Support research data management, including data organisation, storage, documentation, and submission to relevant repositories Contribute to the maintenance and further development of shared computational and IT infrastructure in collaboration with the IT Staff and senior bioinformatician Support the training of Institute of Microbiology members in bioinformatics and computational biology through individual consultations and the organisation of training sessions (e.g. workshops); more experienced candidates may take a leading role in these activities Contribute to the development and maintenance of bioinformatics tools, pipelines, and methods for biological data analysis; experienced candidates are encouraged to initiate and lead method development projects The position is project-based and initially offered for one year, with the possibility of extension on a yearly basis, depending on project duration and funding. Profile We welcome applications from recent MSc graduates as well as candidates with a PhD and/or several years of relevant professional experience in Bioinformatics, Computational Biology, Computer Science, or a related field. The successful candidate is expected to have: Solid background in bioinformatics and/or computational biology, with experience in the analysis of biological data Strong organisational skills and the ability to manage multiple tasks and priorities, and the ability to work both independently and collaboratively in an interdisciplinary research environment Programming skills in one or more relevant languages (e.g. Python, R, Bash) Experience with the analysis of omics data (e.g. genomics, metagenomics, metatranscriptomics); experience with additional data types is an advantage Familiarity with Linux-based computing environments; experience with high-performance computing (HPC) systems is an advantage Knowledge of reproducible research practices, including workflow management and version control (e.g. Git) Depending on the level of experience, the candidate may additionally demonstrate: Experience in data management and submission to public repositories Experience in maintaining bioinformatics pipelines, software environments, or computational infrastructure Experience in training or mentoring students and researchers in bioinformatics or computational biology Initiative in developing bioinformatics tools, methods, or workflows Workplace We offer A stimulating research environment at the Institute of Microbiology at ETH Zurich, one of the world’s leading universities in science and technology Integration into an internationally visible, interdisciplinary research network, including close interaction with projects within the NCCR Microbiomes A collaborative and inclusive working environment with researchers from diverse scientific and cultural backgrounds Access to state-of-the-art computational infrastructure and bioinformatics resources Opportunities for professional development, skills training, and career advancement, with responsibilities adapted to experience and career stage Support for participation in scientific meetings, workshops, and training activities Competitive salary and benefits in accordance with ETH Zurich regulations Flexible working schedule that accommodates your personal needs We foster a culture of collaboration, diversity, and inclusivity in an environment where everyone feels valued, respected, and supported chevron_right Working, teaching and research at ETH Zurich We value diversity and sustainability In line with our values, ETH Zurich encourages an inclusive culture. We promote equality of opportunity, value diversity and nurture a working and learning environment in which the rights and dignity of all our staff and students are respected. Visit our Equal Opportunities and Diversity website to find out how we ensure a fair and open environment that allows everyone to grow and flourish. Sustainability is a core value for us – we are consistently working towards a climate-neutral future. Curious? So are we. We look forward to receiving your online application with the following documents: A cover letter outlining your interests, relevant experience, and motivation for applying to this position. Curriculum vitae (CV) including the contact information of at least two references. Please note that we exclusively accept applications submitted through our online application portal. Applications via email or postal services will not be considered. Further information about the workplace and the NCCR Microbiomes can be found on the websites and the group webpage of the Microbiome Research Lab: . Questions regarding the position (no applications) can be directed to Prof. Shinichi Sunagawa (ssunagawa@ethz.ch), Dr. Hans-Joachim Ruscheweyh (hansr@ethz.ch) and Dr. Anna Sintsova (ansintsova@biol.ethz.ch). Applications will be reviewed on a rolling basis until the position is filled. For recruitment services the GTC of ETH Zurich apply. About ETH Zürich ETH Zurich is one of the world’s leading universities specialising in science and technology. We are renowned for our excellent education, cutting-edge fundamental research and direct transfer of new knowledge into society. Over 30,000 people from more than 120 countries find our university to be a place that promotes independent thinking and an environment that inspires excellence. Located in the heart of Europe, yet forging connections all over the world, we work together to develop solutions for the global challenges of today and tomorrow. If you apply for this position please say you saw it on Bioloxy

Bioinformatician in Microbiome Research

80%-100%, Zurich, fixed-term

The Institute of Microbiology at ETH Zurich invites applications for a Bioinformatician embedded in the Microbiome Research Lab. We seek a highly motivated, skilled, and organised individual to support multiple experimental and computational research groups. The successful candidate will contribute to both a collaborative research network and institute-wide activities, including data management and the maintenance of computational infrastructure and software.

Project background

The position is part of the Institute of Microbiology at ETH Zurich and closely linked to projects within the NCCR Microbiomes. The NCCR Microbiomes is a nationwide, interdisciplinary research programme, bringing together experimental and computational researchers with the aim of understanding and engineering the structure, function, and dynamics of microbiomes across diverse biological and environmental systems.

Several research groups at the Institute of Microbiology contribute to the NCCR Microbiomes. The Bioinformatician will play a central role in supporting collaborative research projects across the network through advanced data analysis, interpretation, and visualisation using reproducible computational workflows. In addition, the position supports institute-wide bioinformatics activities, including the management of data and shared computational infrastructure, enabling efficient and sustainable microbiome research.

Job description

The scope of responsibilities will therefore be adapted to the qualifications and experience of the successful candidate. Key responsibilities include:

Support and contribute to research projects of PhD students and postdoctoral researchers at the Institute of Microbiology by applying and advising on appropriate bioinformatics, biostatistics, and modelling approaches
Perform and support the analysis, integration, and visualisation of multi-omics data (e.g., genomics, metagenomics, metatranscriptomics, proteomics, metabolomics, and imaging data)
Collaborate with experimental and computational researchers on study design, data interpretation, and the development of reproducible computational workflows
Support research data management, including data organisation, storage, documentation, and submission to relevant repositories
Contribute to the maintenance and further development of shared computational and IT infrastructure in collaboration with the IT Staff and senior bioinformatician
Support the training of Institute of Microbiology members in bioinformatics and computational biology through individual consultations and the organisation of training sessions (e.g. workshops); more experienced candidates may take a leading role in these activities
Contribute to the development and maintenance of bioinformatics tools, pipelines, and methods for biological data analysis; experienced candidates are encouraged to initiate and lead method development projects

The position is project-based and initially offered for one year, with the possibility of extension on a yearly basis, depending on project duration and funding.

Profile

We welcome applications from recent MSc graduates as well as candidates with a PhD and/or several years of relevant professional experience in Bioinformatics, Computational Biology, Computer Science, or a related field. The successful candidate is expected to have:

Solid background in bioinformatics and/or computational biology, with experience in the analysis of biological data
Strong organisational skills and the ability to manage multiple tasks and priorities, and the ability to work both independently and collaboratively in an interdisciplinary research environment
Programming skills in one or more relevant languages (e.g. Python, R, Bash)
Experience with the analysis of omics data (e.g. genomics, metagenomics, metatranscriptomics); experience with additional data types is an advantage
Familiarity with Linux-based computing environments; experience with high-performance computing (HPC) systems is an advantage
Knowledge of reproducible research practices, including workflow management and version control (e.g. Git)

Depending on the level of experience, the candidate may additionally demonstrate:

Experience in data management and submission to public repositories
Experience in maintaining bioinformatics pipelines, software environments, or computational infrastructure
Experience in training or mentoring students and researchers in bioinformatics or computational biology
Initiative in developing bioinformatics tools, methods, or workflows

Workplace

We offer

A stimulating research environment at the Institute of Microbiology at ETH Zurich, one of the world’s leading universities in science and technology
Integration into an internationally visible, interdisciplinary research network, including close interaction with projects within the NCCR Microbiomes
A collaborative and inclusive working environment with researchers from diverse scientific and cultural backgrounds
Access to state-of-the-art computational infrastructure and bioinformatics resources
Opportunities for professional development, skills training, and career advancement, with responsibilities adapted to experience and career stage
Support for participation in scientific meetings, workshops, and training activities
Competitive salary and benefits in accordance with ETH Zurich regulations
Flexible working schedule that accommodates your personal needs
We foster a culture of collaboration, diversity, and inclusivity in an environment where everyone feels valued, respected, and supported

chevron_right Working, teaching and research at ETH Zurich

We value diversity and sustainability

In line with our values, ETH Zurich encourages an inclusive culture. We promote equality of opportunity, value diversity and nurture a working and learning environment in which the rights and dignity of all our staff and students are respected. Visit our Equal Opportunities and Diversity website to find out how we ensure a fair and open environment that allows everyone to grow and flourish. Sustainability is a core value for us – we are consistently working towards a climate-neutral future.

Curious? So are we.

We look forward to receiving your online application with the following documents:

A cover letter outlining your interests, relevant experience, and motivation for applying to this position.
Curriculum vitae (CV) including the contact information of at least two references.

Please note that we exclusively accept applications submitted through our online application portal. Applications via email or postal services will not be considered.

Further information about the workplace and the NCCR Microbiomes can be found on the websites and the group webpage of the Microbiome Research Lab: .

Questions regarding the position (no applications) can be directed to Prof. Shinichi Sunagawa (ssunagawa@ethz.ch), Dr. Hans-Joachim Ruscheweyh (hansr@ethz.ch) and Dr. Anna Sintsova (ansintsova@biol.ethz.ch).

Applications will be reviewed on a rolling basis until the position is filled.

For recruitment services the GTC of ETH Zurich apply.

About ETH Zürich

ETH Zurich is one of the world’s leading universities specialising in science and technology. We are renowned for our excellent education, cutting-edge fundamental research and direct transfer of new knowledge into society. Over 30,000 people from more than 120 countries find our university to be a place that promotes independent thinking and an environment that inspires excellence. Located in the heart of Europe, yet forging connections all over the world, we work together to develop solutions for the global challenges of today and tomorrow.

If you apply for this position please say you saw it on Bioloxy

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